Installation
This workflow was designed to use conda for dependency management and Snakemake as the workflow management system, to ensure scalable and reproducible analyses.
Obtain a copy of this workflow
To obtain a copy of this workflow, clone the repository to your local system where you would like to perform the quality control analysis:
git clone https://gitlab.com/data-analysis5/proteomics/54gene-olink-qc.git
Install the runtime environment
If you need to install conda, follow this guide to install Miniconda. We also highly recommend using the mamba for a faster environment creation experience.
Once installed, create the run-time environment using the following command:
conda env create -f environment.yaml
# or mamba env create -f environment.yaml
Then activate the environment as follows:
conda activate 54gene-olink-qc