Installation

This workflow was designed to use conda for dependency management and Snakemake as the workflow management system, to ensure scalable and reproducible analyses.

Obtain a copy of this workflow

To obtain a copy of this workflow, clone the repository to your local system where you would like to perform the quality control analysis:

git clone https://gitlab.com/data-analysis5/proteomics/54gene-olink-qc.git

Install the runtime environment

If you need to install conda, follow this guide to install Miniconda. We also highly recommend using the mamba for a faster environment creation experience.

Once installed, create the run-time environment using the following command:

conda env create -f environment.yaml
# or mamba env create -f environment.yaml

Then activate the environment as follows:

conda activate 54gene-olink-qc